Scatterplot of log2 RPF-to-mRNA ratios.

Source: R/plot-r.R

A simple function that plots the log2 RPF-to-mRNA ratios in two conditions. Different classes of genes are labeled with different of color. Each dot, representing a particular gene, are color coded by the category of expression change.

plotRs(object, ...)

# S4 method for xtail
plotRs(object, log2R.cutoff = 1, xlim = NULL, ylim = NULL)

Arguments

object

a xtail object
...

optional arguments. Currently not used
log2R.cutoff

cutoff for categorizing results
xlim

argument for limiting the range plotted on the x axis. See scale_continuous for more details.
ylim

argument for limiting the range plotted on the y axis. See scale_continuous for more details.

Value

a ggplot object

Examples

data(xtailres)
plotRs(xtailres)