The tRNAdb and mttRNAdb (Juehling et al. 2009) is a compilation of tRNA sequences and tRNA genes. It is a follow up version of the database of Sprinzl et al. (2005). Using tRNAdbImport the tRNAdb can be accessed as outlined on the website trna.bioinf.uni-leipzig.de directly via R. The results are returned as a GRanges object and can be further used in a BioC context.
Installation
The current version of the tRNAdbImport package is available from Bioconductor.
{r} if (!requireNamespace("BiocManager", quietly = TRUE)) install.packages("BiocManager") BiocManager::install("tRNAdbImport") # Load and attach the package library("tRNAdbImport")
Literature
- Jühling, Frank; Mörl, Mario; Hartmann, Roland K.; Sprinzl, Mathias; Stadler, Peter F.; Pütz, Joern (2009): “TRNAdb 2009: Compilation of tRNA Sequences and tRNA Genes.” Nucleic Acids Research 37 (suppl_1): D159–D162. doi:[10.1093/nar/gkn772](https://doi.org/10.1093/nar/gkn772).
- Sprinzl, Mathias; Vassilenko, Konstantin S. (2005): “Compilation of tRNA Sequences and Sequences of tRNA Genes.” Nucleic Acids Research 33 (suppl_1): D139–D140. doi:[10.1093/nar/gki012](https://doi.org/10.1093/nar/gki012).
