Modstrings internals — Modstrings-internals • Modstrings

Analog to Biostrings there are a few functions, which should only be used internally. Otherwise take care.

# S4 method for ModDNAString
seqtype(x)

# S4 method for ModRNAString
seqtype(x)

# S4 method for ModString
seqtype(x) <- value

# S4 method for ModString
XString(seqtype, x, start = NA, end = NA, width = NA)

# S4 method for ModStringSet
seqtype(x) <- value

# S4 method for ModStringSet
XStringSet(seqtype, x, start = NA, end = NA, width = NA, use.names = TRUE)

data(modsRNA)

data(modsDNA)

data(MOD_RNA_DICT_MODOMICS)

data(MOD_RNA_DICT_TRNADB)

Format

An object of class DFrame with 162 rows and 9 columns.

An object of class DFrame with 47 rows and 5 columns.

An object of class DFrame with 170 rows and 3 columns.

An object of class DFrame with 60 rows and 3 columns.

Arguments

seqtype, x, start, end, width, use.names, value: used internally

Value

a XString* object